Publications
2006-Present
KL Nicholson, N Tarlyn, T Armour, M Swanson and A Dhingra 2012. Effect of phyllotactic position and cultural treatments toward successful direct shoot organogenesis in dwarf ‘Pixie’ grapevine (Vitis vinifera L.). Plant Cell, Tissue and Organ Culture DOI: 10.1007/s11240-012-0173-2
SF Garczynski, BS Coates, TR Unruh, S Schaeffer, D Jiwan, T Koepke and A Dhingra. 2012 Application of Cydia pmonella expressed sequence tags: identification and expression of three general odorant binding proteins in codling moth. Insect Science DOI: 10.1111/j.1744-7917.2012.01560.x
A Fernandez I Marti, B Athanson, T Koepke, C Font I Forcada, A Dhingra, N Oraguzie. 2012 Genetic diversity and relatedness of sweet cherry (Prunus avium L.) cultivars based on single nucleotide polymorphic markers. Frontiers in Plant Science 3: 116.
K Kohzuma, CD Bosco, A Kanazawa, A Dhingra, W Nitschke, J Meurer and DM Kramer. 2012 Thioredoxin-insensitive plastid ATP synthase that performs moonlighting functions. Proceedings of the National Academy of Sciences USA DOI: 10.1073/pnas.1115728109
T Koepke, S Schaeffer, V Krishnan, D Jiwan, A Harper, M Whiting, N Oraguzie and A Dhingra. 2012 Rapid gene-based SNP and haplotype marker development in non-model eukaryotes using 3′UTR sequencing. BMC Genomics 13: 18.
R Ahmad, DE Parfitt, J Fass, E Ogundiwin, A Dhingra, TM Gradziel, D Lin, NA Joshi, P Martinez-Garcia and CH Crisosto. 2011 Whole genome sequencing of peach (Prunus persica L.) for SNP identification and selection. BMC Genomics. 12:569.
J Rosnow, S Offermann, J Park, T Okita, N Tarlyn, A Dhingra and G Edwards. 2011 In vitro cultures and regeneration of Bienertia sinuspersici (Chenopodiaceae) under increasing concentrations of sodium chloride and carbon dioxide. Plant Cell Reports 30:1541-53.
M Moore, N Hassan, M Gitzendanner, R Bruenn, M Croley, A Vandeventer, J Horn, A Dhingra, S Brockington, M Latvis, J Ramdial, R Alexandre, A Piedrahita, Z Xi, C Davis, P Soltis & D Soltis. 2011 Phylogenetic analysis of the plastid inverted repeat for 244 species: insights into deeper-level angiosperm relationships from a long, slowly evolving sequence region. International Journal of Plant Sciences 172: 541-558.
R Velasco, A Zharkikh, J Affourtit, A Dhingra, A Cestaro, A Kalyanaraman et al. 2010 The genome of the domesticated apple (Malus x domestica Borkh.). Nature Genetics 42: 833-839.
K Folta, MA Clancy, S Chamala, AM Brunings, A Dhingra, L Gomide, RJ Kulathinal, N Peres, TM Davis & WB Barbazuk. 2010 A transcript accounting from diverse tissues of a cultivated strawberry. The Plant Genome 3: 1-16.
A Livingston, JA Cruz, K Kohzuma, A Dhingra and DM Kramer. 2010 An Arabidopsis mutant with high cyclic electron flow around photosystem I (hcef) involving the NDH complex. Plant Cell 22: 221 – 233
S Brockington, R Alexandre, J Ramdial, M Moore, S Crawley, A Dhingra, K Hilu, D Soltis and P Soltis. 2009 Phylogeny of the Caryophyllales sensu lato: revising hypothesis on pollination biology and perianth differentiation in the core Caryophyllales. International Journal of Plant Sciences 170: 627-643
Md M Haque, A Kalyanaraman, A Dhingra, N Abu-Lail and K Graybeal. 2009 DNAJig: A new approach for building DNA nanostructures. IEEE International Conference on Bioinformatics & Biomedicine. Nov 1-4, Washington DC
B Sosinski, V Shulaev, A Dhingra, A Kalyanaraman, R Bumgarner, D Rokhsar, I Verde, R Velasco, A Abbot. 2009 Rosaceous Genome Sequencing: Perspectives and Progress. In: Folta KM and Gardner SE (eds) Genetics and Genomics of Rosaceae. Plant Genetics and Genomics: Crops and Models vol 6 pp 601 – 605
MD Logacheva, TH Samigullin, A Dhingra, AA Penin. 2008 Chloroplast genomics and phylogenetic analysis of Fagopyrum esculentum ssp ancestralis – a wild ancestor or cultivated buckwheat. BMC Plant Biology 8: 59 
S Jian, P Soltis, M Gitzendanner, M Moore, R Li, T Hendry, Y Qiu, A Dhingra, C Bell, D Soltis. 2008. Resolving an ancient, rapid radiation in Saxifragales. Systematic Biology 57: 28-57
A Dhingra A, VA James, HU Koop, MC Mok, R De Paepe, M Gallo, KM Folta. 2007. Tobacco – In: Kole C, Hall TC (eds) A Compendium of Transgenic Crop Plants. Blackwell Publishing, Oxford, UK. pp 1 – 56
A Dhingra, DH Bies, KR Lehner and KM Folta. 2006. Green light adjusts the plastid transcriptome during early photomorphogenic development. Plant Physiology 142:1256-1266
KM Folta and A Dhingra. 2006. Transformation of strawberry: The basis for translational genomics in Rosaceae. In Vitro Cellular and Developmental Biology – Plant 42:482-490
MJ Moore, A Dhingra, PS Soltis, R Shaw, WG Farmerie, KM Folta and DS Soltis. 2006. Rapid and accurate pyrosequencing of angiosperm plastid genomes. BMC Plant Biology 6:17
KM Folta, A Dhingra, L Howard, P Stewart and CK Chandler. 2006. Characterization of LF9, an octaploid strawberry genetic line selected for rapid regeneration and transformation. Planta 224:1058-1067
1996 – 2005
KM Folta, A Dhingra, SA Maruhnich, DH Bies andJ Justice. 2005. Terrestrial and space applications of LEDs in regulating plant growth and development. Proceedings of Light Emitting Diodes 2005 Conference, San Diego, CA, October 17-20, 2005.
A Dhingra and KM Folta. 2005. ASAP: Amplification, sequencing and annotation of plastomes. BMC Genomics 6:176. (Highly accessed paper).
A Dhingra and H Daniell. 2005. Chloroplast transformation via organogenesis or somatic embryogenesis. Arabidopsis Protocols 2nd Ed. Methods in Molecular Biology 323 251- 269.
A Dhingra and H Daniell. 2004. Engineering of herbicide resistance pathways via plastid genetic engineering. In: Daniell H and Chase CD (eds), Molecular Biology of Plant Organelles, pp 491-512. Kluwer Academic Publishers.
A Dhingra, AR Portis Jr. and Henry Daniell. 2004. Enhanced translation of a chloroplast expressed RbcS gene restores SSU levels and photosynthesis in nuclear antisense RbcS plants. Proceedings of National Academy of Sciences, USA, 101:6315-6320.
H Daniell, O Ruiz and A Dhingra. 2004. Chloroplast transformation of higher plants. Methods in Molecular Biology 286:111-137.
S Kumar, A Dhingra and H Daniell. 2004. Plastid expressed betaine aldehyde dehydrogenase gene in carrot cultured cells, roots and leaves, confers enhanced salt tolerance. Plant Physiology 136:2843-2854.
S Kumar, A Dhingra and H Daniell. 2004. Stable transformation of the cotton plastid genome and maternal inheritance of transgenes. Plant Molecular Biology 56: 203-216.
A Dhingra, JP Khurana and AK Tyagi. 2004. Involvement of G-proteins and calmodulin in lightdependent control of the expression of (psbA, psaA and rbcL) in rice (Oryza sativa L.). Plant Science 166:163-168.
H Daniell and A Dhingra. 2002. Multigene engineering: Dawn of an exciting new era in plant biotechnology. Current Opinion in Biotechnology 13:136-141.
AK Tyagi, JP Khurana, AK Sharma, A Mohanty, A Dhingra, S Raghuvanshi and T Gaur. 2002. Mechanism of regulation of gene expression for chloroplast proteins. In: SK Sopory, R Oelmuller, SC Maheshwari (eds). Signal transduction in plants. Current advances, pp 297- 307. Kluwer Academic/Plenum Publishers, New York.
H Daniell, A Dhingra and LA Allison. 2002. Chloroplast Transformation: From Basic Molecular Biology to Biotechnology. Reviews in Plant Biotechnology and Biochemistry 1:1-20.
H Daniell, A Dhingra and A Fernandez San-Milan. 2001. Chloroplast transgenic approach for the production of antibodies, biopharmaceuticals and edible vaccines. In International Congress of Photosynthesis; Brisbane, Australia, 2001:S40-04.
AK Tyagi, A Dhingra, S Raghuvanshi. 2000. Light-regulated expression of photosynthesisrelated genes. In: M Yunus, U Pathre, P Mohanty (eds), Probing Photosynthesis: Mechanism, Regulation and Adaptation, pp 324-341.Taylor and Francis Publishers Ltd., London
M Grover, A Dhingra, AK Sharma, et al. 1999. Involvement of phytochrome, Ca2+ and phosphorylation in light-dependent control of transcript levels for plastid genes (psbA, psaA and rbcL) in rice (Oryza sativa L.). Physiologia Plantarum 105:701-707.
M Grover, AK Sharma, A Dhingra, et al. 1998. Regulation of plastid gene expression involves calcium and protein phosphatases/kinases for signal transduction. Plant Science 137:185- 190.
AK Tyagi, AK Sharma, M Grover, A Mohanty, A Dhingra, et. al. 1998. Investigations on expression and engineering of genes in rice. In: Gupta, P. K. (ed), Proceedings of the Symposium on Genetics and Biotechnology in crop improvement, pp 169-181. Rastogi Publications, Meerut, India.
AK Tyagi, A Sharma, S Bajaj, Anju, A Mohanty, A Dhingra, S Raghuvanshi, NR Chaudhury, S Mukherjee. 1997. Investigations on expression and engineering of plastid and nuclear genes in rice. In: Abstracts of General Meeting of the International Program on Rice Biotechnology, Malacca, Malaysia.
AK Tyagi, M Grover, A Sharma, CN Chowdhry, A Mohanty, A Dhingra, S Raghuvanshi, N Maheshwari, SC Maheshwari, NR Choudhury, S Mukherjee and VP Singh. 1996. Studies on expression and engineering of plastid and nuclear genes in rice. In: Abstracts of 5th Annual Meeting, National Rice Biotechnology Network, IARI, New Delhi.